Function reference • SCORPIUS

All functions

SCORPIUS-package SCORPIUS: SCORPIUS: Trajectory inference from single-cell RNA sequencing data.

draw_trajectory_heatmap(): Draw time-series heatmap

draw_trajectory_plot(): Visualise SCORPIUS

extract_modules(): Extract modules of features

gene_importances(): Calculate the importance of a feature

generate_dataset(): Generate a synthetic dataset

ginhoux: scRNA-seq data of dendritic cell progenitors.

infer_initial_trajectory(): Infer an initial trajectory through space

infer_trajectory(): Infer linear trajectory through space

reduce_dimensionality(): Dimensionality reduction

reverse_trajectory(): Reverse a trajectory

ti_scorpius(): Infer a trajectory using SCORPIUS